init: 初始化 dpb 桃育种系统代码库
前后端 + 后端 FastAPI 全量源码、部署脚本与文档。
This commit is contained in:
34047007@qq.com
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import urllib.parse
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from typing import Annotated
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from fastapi import APIRouter, Body, Depends, File, Path, Query, UploadFile
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from fastapi.responses import JSONResponse, StreamingResponse
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from sqlalchemy.ext.asyncio import AsyncSession
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from app.common.response import ResponseSchema, StreamResponse, SuccessResponse
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from app.core.base_schema import AuthSchema, PageResultSchema, PaginationQueryParam, ImportResultSchema
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from app.core.dependencies import AuthPermission, db_getter
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from app.core.router_class import OperationLogRoute
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from app.utils.common_util import bytes2file_response
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from .schema import (
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TreeCreateSchema,
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TreeOutSchema,
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TreeQueryParam,
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TreeUpdateSchema,
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)
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from .service import TreeService
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TreeRouter = APIRouter(route_class=OperationLogRoute, prefix="/tree", tags=["育种单株"])
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@TreeRouter.get("/detail/{id}", summary="获取育种单株详情", response_model=ResponseSchema[TreeOutSchema])
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async def get_tree__detail_controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:detail"]))],
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id: Annotated[int, Path(description="育种单株ID")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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result_dict = await service.detail(id=id)
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return SuccessResponse(data=result_dict, msg="获取育种单株详情成功")
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@TreeRouter.get("/list", summary="分页查询育种单株", response_model=ResponseSchema[PageResultSchema[TreeOutSchema]])
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async def get_tree__list_controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:query"]))],
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page: Annotated[PaginationQueryParam, Depends()],
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search: Annotated[TreeQueryParam, Query()],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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result_dict = await service.page(
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page_no=page.page_no,
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page_size=page.page_size,
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search=search,
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order_by=page.order_by,
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)
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return SuccessResponse(data=result_dict, msg="查询育种单株列表成功")
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@TreeRouter.get("/options", summary="育种单株下拉选项")
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async def get_tree__options_controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:query"]))],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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options = await service.list_options()
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return SuccessResponse(data=options, msg="获取育种单株选项成功")
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@TreeRouter.post("/create", summary="创建育种单株", response_model=ResponseSchema[TreeOutSchema])
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async def create_tree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:create"]))],
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data: Annotated[TreeCreateSchema, Body(description="创建参数")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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result_dict = await service.create(data=data)
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return SuccessResponse(data=result_dict, msg="创建育种单株成功")
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@TreeRouter.put("/update/{id}", summary="修改育种单株", response_model=ResponseSchema[TreeOutSchema])
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async def update_tree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:update"]))],
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id: Annotated[int, Path(description="育种单株ID")],
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data: Annotated[TreeUpdateSchema, Body(description="修改参数")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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result_dict = await service.update(id=id, data=data)
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return SuccessResponse(data=result_dict, msg="修改育种单株成功")
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@TreeRouter.delete("/delete", summary="删除育种单株", response_model=ResponseSchema[None])
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async def delete_tree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:delete"]))],
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ids: Annotated[list[int], Body(description="ID列表")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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await service.delete(ids=ids)
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return SuccessResponse(msg="删除育种单株成功")
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@TreeRouter.post("/export", summary="导出育种单株")
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async def export_tree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:export"]))],
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search: Annotated[TreeQueryParam, Query()],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> StreamingResponse:
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service = TreeService(auth, db)
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result_dict_list = await service.get_list(search=search)
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export_result = TreeService.batch_export(obj_list=[item.model_dump() for item in result_dict_list])
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return StreamResponse(
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data=bytes2file_response(export_result),
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media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
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headers={"Content-Disposition": f"attachment; filename={urllib.parse.quote('育种单株管理.xlsx')}"},
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)
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@TreeRouter.post("/import", summary="导入育种单株", response_model=ResponseSchema[ImportResultSchema])
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async def import_tree__controller(
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file: Annotated[UploadFile, File(description="导入文件")],
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:tree:import"]))],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = TreeService(auth, db)
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batch_import_result = await service.batch_import(file=file, update_support=True)
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return SuccessResponse(data=batch_import_result, msg="导入育种单株成功")
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@TreeRouter.post("/download/template", summary="获取育种单株导入模板", dependencies=[Depends(AuthPermission(["module_bre:tree:download"]))])
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async def download_tree__template_controller() -> StreamingResponse:
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import_template_result = TreeService.import_template_download()
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return StreamResponse(
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data=bytes2file_response(import_template_result),
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media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
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headers={
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"Content-Disposition": f"attachment; filename={urllib.parse.quote('育种单株管理导入模板.xlsx')}",
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"Access-Control-Expose-Headers": "Content-Disposition",
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},
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)
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@@ -0,0 +1,18 @@
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from typing import Any
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from sqlalchemy.ext.asyncio import AsyncSession
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from app.core.base_crud import CRUDBase
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from app.core.base_schema import AuthSchema
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from .model import TreeModel
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class BreedingTreeCRUD(CRUDBase[TreeModel, Any, Any]):
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"""育种单株 CRUD —— 直接复用 CRUDBase（已自动注入数据权限过滤）。"""
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def __init__(self, auth: AuthSchema, db: AsyncSession) -> None:
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super().__init__(TreeModel, auth, db)
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tree_crud = BreedingTreeCRUD
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"""育种单株 数据模型"""
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from datetime import datetime
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from sqlalchemy import Float, ForeignKey, Index, Integer, String, Text, text
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from sqlalchemy.orm import Mapped, mapped_column
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from app.core.base_model import MappedBase, ModelMixin, UserMixin
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class TreeModel(ModelMixin, UserMixin, MappedBase):
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"""育种单株 主数据表。"""
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__tablename__ = "bre_tree"
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combination_id: Mapped[int] = mapped_column(
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Integer, ForeignKey("bre_cross_combination.id", ondelete="CASCADE"),
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index=True, nullable=False, comment="杂交组合"
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)
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dam_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_germplasm.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="母本(种质)"
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)
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sire_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_germplasm.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="父本(种质)"
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)
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trial_study_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_trial_study.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="所属试验/站点(MET)"
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)
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block_no: Mapped[int | None] = mapped_column(Integer, nullable=True, comment="区组号")
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rootstock_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_rootstock.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="砧木"
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)
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clone_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_clone.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="入选克隆"
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)
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plot_id: Mapped[int] = mapped_column(
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Integer, ForeignKey("bre_plot.id", ondelete="CASCADE"),
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index=True, nullable=True, comment="试验地块/位置"
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)
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planting_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_planting.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="来源定植批次（一次定植包含多棵单株）"
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)
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tree_no: Mapped[str] = mapped_column(String(100), nullable=False, comment="单株编号")
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row_orientation: Mapped[str | None] = mapped_column(String(50), nullable=True, comment="行向", default=None)
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row_no: Mapped[int | None] = mapped_column(Integer, nullable=True, comment="行数", default=None)
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col_no: Mapped[int | None] = mapped_column(Integer, nullable=True, comment="列数", default=None)
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planted_date: Mapped[str | None] = mapped_column(String(20), nullable=True, comment="定植时间", default=None)
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bre_personnel_id: Mapped[int] = mapped_column(
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Integer, ForeignKey("bre_personnel.id", ondelete="CASCADE"),
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index=True, nullable=True, comment="责任人"
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)
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status: Mapped[str | None] = mapped_column(String(50), nullable=True, comment="状态", default=None)
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remark: Mapped[str | None] = mapped_column(Text, nullable=True, comment="备注", default=None)
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stage: Mapped[str | None] = mapped_column(String(32), nullable=True, comment="当前育种阶段(breeding_stage)")
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generation: Mapped[str | None] = mapped_column(String(16), nullable=True, comment="世代(breeding_generation)")
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germplasm_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_germplasm.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="关联种质(晋升回填,不手填)"
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)
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entry_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_trial_study_entry.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="参试条目(派生自定植)"
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)
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# 无 status 列：覆盖基类默认 ix_<表>_status_deleted 索引，
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# 仅保留 (created_time, is_deleted) 复合索引用于数据权限过滤。
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__table_args__ = (
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Index("ix_bre_tree_created_deleted", "created_time", "is_deleted"),
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# 单株编号全局唯一（仅约束未软删记录，与 service 层查重语义一致）
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Index(
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"uniq_bre_tree_no", "tree_no",
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unique=True, postgresql_where=text("is_deleted = false"),
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),
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)
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class TreePedigreeExclusionModel(ModelMixin, UserMixin, MappedBase):
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"""系谱隔离注册表（v2.26 N1）：孟德尔检验 flag 的树断开声明亲本链（退化为 founder），
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自身表型保留；后续检验不再 flag 时行被清除（可逆）。系谱消费方据此置空 dam/sire。"""
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__tablename__ = "bre_pedigree_exclusion"
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tree_id: Mapped[int] = mapped_column(
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Integer, ForeignKey("bre_tree.id", ondelete="CASCADE"),
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index=True, nullable=False, comment="单株"
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)
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reason: Mapped[str | None] = mapped_column(String(512), nullable=True, comment="隔离原因")
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source_type: Mapped[str | None] = mapped_column(String(32), nullable=True, comment="来源类型")
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source_check_id: Mapped[int | None] = mapped_column(Integer, nullable=True, comment="来源检验批次ID")
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__table_args__ = (
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# 唯一树（同树仅一条隔离记录；同树多来源时按最新覆盖）
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Index(
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"uniq_bre_pedigree_exclusion_tree", "tree_id",
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unique=True, postgresql_where=text("is_deleted = false"),
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),
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Index("ix_bre_pedigree_exclusion_created_deleted", "created_time", "is_deleted"),
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)
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@@ -0,0 +1,102 @@
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from app.core.base_schema import CommonSchema
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"""育种单株 —— Pydantic 校验/序列化模型。"""
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from datetime import datetime
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from pydantic import BaseModel, ConfigDict, Field
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class TreeBaseSchema(BaseModel):
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model_config = ConfigDict(from_attributes=True)
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combination_id: int = Field(..., description="杂交组合")
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dam_id: int | None = Field(default=None, description="母本(种质)；留空自动取组合母本")
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sire_id: int | None = Field(default=None, description="父本(种质)；留空自动取组合父本")
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trial_study_id: int | None = Field(default=None, description="试验执行(MET,规格 §3.13)")
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block_no: int | None = Field(default=None, description="区组号")
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rootstock_id: int | None = Field(default=None, description="砧木(规格 §3.17)")
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clone_id: int | None = Field(default=None, description="无性系(规格 §3.0)")
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plot_id: int | None = Field(default=None, description="试验地块/位置")
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planting_id: int | None = Field(default=None, description="来源定植批次")
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tree_no: str | None = Field(default=None, description="单株编号（留空自动生成 组合编号-序号）")
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row_orientation: str | None = Field(default=None, description="行向")
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row_no: int | None = Field(default=None, description="行数")
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col_no: int | None = Field(default=None, description="列数")
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planted_date: str | None = Field(default=None, description="定植时间")
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bre_personnel_id: int | None = Field(default=None, description="责任人")
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status: str | None = Field(default=None, description="状态")
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remark: str | None = Field(default=None, description="备注")
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stage: str | None = Field(default=None, description="当前育种阶段(breeding_stage)")
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generation: str | None = Field(default=None, description="世代(breeding_generation)")
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entry_id: int | None = Field(default=None, description="参试条目(派生自定植,表单不暴露)")
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class TreeCreateSchema(TreeBaseSchema):
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pass
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class TreeUpdateSchema(TreeBaseSchema):
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combination_id: int | None = Field(default=None, description="杂交组合")
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plot_id: int | None = Field(default=None, description="试验地块/位置")
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planting_id: int | None = Field(default=None, description="来源定植批次")
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tree_no: str | None = Field(default=None, description="单株编号")
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row_orientation: str | None = Field(default=None, description="行向")
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row_no: int | None = Field(default=None, description="行数")
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col_no: int | None = Field(default=None, description="列数")
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planted_date: str | None = Field(default=None, description="定植时间")
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bre_personnel_id: int | None = Field(default=None, description="责任人")
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status: str | None = Field(default=None, description="状态")
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remark: str | None = Field(default=None, description="备注")
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stage: str | None = Field(default=None, description="当前育种阶段(breeding_stage)")
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generation: str | None = Field(default=None, description="世代(breeding_generation)")
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class TreeOutSchema(TreeBaseSchema):
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id: int
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uuid: str
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combination_name: str | None = None # 由 Service 层联表填充
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dam_name: str | None = None # 由 Service 层联表填充（母本品种名）
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sire_name: str | None = None # 由 Service 层联表填充（父本品种名）
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study_name: str | None = None # 由 Service 层联表填充（试验执行名称）
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rootstock_name: str | None = None # 由 Service 层联表填充（砧木名称）
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clone_name: str | None = None # 由 Service 层联表填充（无性系编号）
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plot_name: str | None = None # 由 Service 层联表填充
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planting_id: int | None = None
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planting_name: str | None = None # 由 Service 层联表填充（定植批次展示）
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tree_no: str | None = None
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row_orientation: str | None = None
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row_no: int | None = None
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col_no: int | None = None
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planted_date: str | None = None
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bre_personnel_name: str | None = None # 由 Service 层联表填充
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status: str | None = None
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remark: str | None = None
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stage: str | None = None
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generation: str | None = None
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warning: str | None = None # 创建/更新时显式亲本与组合父母本不一致的警示（仅返回体，不落库）
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germplasm_id: int | None = None # 晋升回填,非表单字段
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entry_id: int | None = None # 派生自定植,非表单字段
|
||||
germplasm_name: str | None = None # 由 Service 层联表填充(关联种质名)
|
||||
entry_number: int | None = None # 由 Service 层联表填充(参试编号)
|
||||
created_time: datetime | None = None
|
||||
updated_time: datetime | None = None
|
||||
created_by: CommonSchema | None = None
|
||||
updated_by: CommonSchema | None = None
|
||||
|
||||
|
||||
class TreeQueryParam(BaseModel):
|
||||
combination_id: int | None = Field(default=None, description="杂交组合", json_schema_extra={"q": "eq"})
|
||||
trial_study_id: int | None = Field(default=None, description="试验执行", json_schema_extra={"q": "eq"})
|
||||
rootstock_id: int | None = Field(default=None, description="砧木", json_schema_extra={"q": "eq"})
|
||||
clone_id: int | None = Field(default=None, description="无性系", json_schema_extra={"q": "eq"})
|
||||
plot_id: int | None = Field(default=None, description="试验地块/位置", json_schema_extra={"q": "eq"})
|
||||
planting_id: int | None = Field(default=None, description="来源定植批次", json_schema_extra={"q": "eq"})
|
||||
tree_no: str | None = Field(default=None, description="单株编号", json_schema_extra={"q": "like"})
|
||||
planted_date: str | None = Field(default=None, description="定植时间", json_schema_extra={"q": "like"})
|
||||
row_orientation: str | None = Field(default=None, description="行向", json_schema_extra={"q": "eq"})
|
||||
bre_personnel_id: int | None = Field(default=None, description="责任人", json_schema_extra={"q": "eq"})
|
||||
status: str | None = Field(default=None, description="状态", json_schema_extra={"q": "eq"})
|
||||
stage: str | None = Field(default=None, description="育种阶段", json_schema_extra={"q": "eq"})
|
||||
generation: str | None = Field(default=None, description="世代", json_schema_extra={"q": "eq"})
|
||||
germplasm_id: int | None = Field(default=None, description="关联种质", json_schema_extra={"q": "eq"})
|
||||
entry_id: int | None = Field(default=None, description="参试条目", json_schema_extra={"q": "eq"})
|
||||
|
||||
@@ -0,0 +1,540 @@
|
||||
from typing import Any
|
||||
|
||||
from fastapi import UploadFile
|
||||
from sqlalchemy.ext.asyncio import AsyncSession
|
||||
|
||||
from app.core.base_schema import AuthSchema, PageResultSchema, ImportResultSchema
|
||||
from app.core.exceptions import CustomException
|
||||
from app.core.logger import logger
|
||||
from app.utils.common_util import search_to_dict
|
||||
from app.utils.excel_util import ExcelUtil
|
||||
from app.utils.dict_util import DictLabelResolver, dict_value_to_label
|
||||
from app.utils.number_gen import NumberGenService
|
||||
|
||||
from .crud import BreedingTreeCRUD
|
||||
from .schema import (
|
||||
TreeCreateSchema,
|
||||
TreeOutSchema,
|
||||
TreeQueryParam,
|
||||
TreeUpdateSchema,
|
||||
)
|
||||
from app.api.v1.module_bre.cross_combination.crud import BreedingCrossCombinationCRUD
|
||||
from app.api.v1.module_bre.germplasm.crud import BreedingGermplasmCRUD
|
||||
from app.api.v1.module_bre.germplasm.model import BreedingGermplasmModel
|
||||
from app.api.v1.module_bre.clone.crud import BreedingCloneCRUD
|
||||
from app.api.v1.module_bre.rootstock.crud import BreedingRootstockCRUD
|
||||
from app.api.v1.module_bre.trial_study.crud import BreedingTrialStudyCRUD
|
||||
from app.api.v1.module_bre.site.crud import BreedingPlotCRUD
|
||||
from app.api.v1.module_bre.personnel.crud import BreedingPersonnelCRUD
|
||||
from app.api.v1.module_bre.planting.crud import BreedingPlantingCRUD
|
||||
from app.api.v1.module_bre.trial_study_entry.crud import BreedingTrialStudyEntryCRUD
|
||||
|
||||
|
||||
|
||||
from app.core.base_crud import assert_dict_values, assert_no_children, assert_parents_exist, assert_status_forward
|
||||
from app.api.v1.module_bre.site.model import BreedingPlotModel
|
||||
from app.api.v1.module_bre.cross_combination.model import CrossCombinationModel
|
||||
from app.api.v1.module_bre.clone.model import CloneModel
|
||||
from app.api.v1.module_bre.rootstock.model import RootstockModel
|
||||
from app.api.v1.module_bre.trial_study.model import TrialStudyModel
|
||||
from app.api.v1.module_bre.personnel.model import PersonnelModel
|
||||
from app.api.v1.module_bre.planting.model import PlantingModel
|
||||
from app.api.v1.module_bre.selection_result.model import SelectionResultModel
|
||||
from app.api.v1.module_bre.trait_observation.model import TraitObservationModel
|
||||
from app.api.v1.module_bre.tree_evaluation.model import TreeEvaluationModel
|
||||
from app.api.v1.module_bre.tree_photo.model import TreePhotoModel
|
||||
|
||||
def _is_blank(v: Any) -> bool:
|
||||
return v is None or (isinstance(v, str) and v.strip() == "")
|
||||
|
||||
|
||||
def _none_if_blank(v: Any) -> Any:
|
||||
if _is_blank(v):
|
||||
return None
|
||||
return str(v).strip() if isinstance(v, str) else v
|
||||
|
||||
|
||||
def _to_float(v: Any) -> float | None:
|
||||
if _is_blank(v):
|
||||
return None
|
||||
try:
|
||||
return float(v)
|
||||
except (TypeError, ValueError):
|
||||
return None
|
||||
|
||||
|
||||
def _to_int(v: Any) -> int | None:
|
||||
if _is_blank(v):
|
||||
return None
|
||||
try:
|
||||
return int(float(v))
|
||||
except (TypeError, ValueError):
|
||||
return None
|
||||
|
||||
|
||||
class TreeService:
|
||||
"""育种单株 模块服务层"""
|
||||
|
||||
def __init__(self, auth: AuthSchema, db: AsyncSession) -> None:
|
||||
self.auth = auth
|
||||
self.db = db
|
||||
|
||||
async def _resolve_parents(
|
||||
self, combination_id: int | None, dam_id: int | None, sire_id: int | None
|
||||
) -> tuple[int | None, int | None, str | None]:
|
||||
"""母本/父本：未显式给出时从组合取 female/male 亲本；显式给出时校验种质存在且方向可用。
|
||||
|
||||
显式亲本与组合父母本不一致时返回警示文案（以显式为准，不阻断）。
|
||||
"""
|
||||
combo_dam = combo_sire = None
|
||||
if combination_id is not None:
|
||||
cc = await BreedingCrossCombinationCRUD(self.auth, self.db).get(id=combination_id)
|
||||
if cc:
|
||||
combo_dam = cc.female_parent_id
|
||||
combo_sire = cc.male_parent_id
|
||||
dam = dam_id if dam_id is not None else combo_dam
|
||||
sire = sire_id if sire_id is not None else combo_sire
|
||||
mismatches = []
|
||||
if dam_id is not None and combo_dam is not None and dam_id != combo_dam:
|
||||
mismatches.append("显式母本与组合母本不一致")
|
||||
if sire_id is not None and combo_sire is not None and sire_id != combo_sire:
|
||||
mismatches.append("显式父本与组合父本不一致")
|
||||
warning = ("；".join(mismatches) + "（以显式为准）") if mismatches else None
|
||||
explicit = [
|
||||
(dam_id, "can_be_female", "母本") if dam_id is not None else None,
|
||||
(sire_id, "can_be_male", "父本") if sire_id is not None else None,
|
||||
]
|
||||
explicit = [e for e in explicit if e]
|
||||
if explicit:
|
||||
ids = {e[0] for e in explicit}
|
||||
germs = await BreedingGermplasmCRUD(self.auth, self.db).get_list(search={"id": ("in", list(ids))})
|
||||
germ_map = {g.id: g for g in germs}
|
||||
for gid, flag, role in explicit:
|
||||
g = germ_map.get(gid)
|
||||
if not g:
|
||||
raise CustomException(msg=f"种质不存在(id={gid})，无法作为{role}")
|
||||
if not getattr(g, flag):
|
||||
raise CustomException(msg=f"种质「{g.cultivar_name}」不可作{role}")
|
||||
return dam, sire, warning
|
||||
|
||||
async def _attach_fk_labels(self, items: list[TreeOutSchema]) -> None:
|
||||
if not items:
|
||||
return
|
||||
crud = BreedingTreeCRUD(self.auth, self.db)
|
||||
combination_id_ids = {getattr(it, "combination_id") for it in items if getattr(it, "combination_id")}
|
||||
if combination_id_ids:
|
||||
refs = await BreedingCrossCombinationCRUD(self.auth, self.db).get_list(search={"id": ("in", list(combination_id_ids))})
|
||||
ref_map = {r.id: getattr(r, "combination_code") for r in refs}
|
||||
for it in items:
|
||||
it.combination_name = ref_map.get(getattr(it, "combination_id"))
|
||||
germ_ids = {getattr(it, "dam_id") for it in items if getattr(it, "dam_id")}
|
||||
germ_ids |= {getattr(it, "sire_id") for it in items if getattr(it, "sire_id")}
|
||||
if germ_ids:
|
||||
germs = await BreedingGermplasmCRUD(self.auth, self.db).get_list(search={"id": ("in", list(germ_ids))})
|
||||
germ_map = {r.id: getattr(r, "cultivar_name") for r in germs}
|
||||
for it in items:
|
||||
it.dam_name = germ_map.get(getattr(it, "dam_id"))
|
||||
it.sire_name = germ_map.get(getattr(it, "sire_id"))
|
||||
plot_id_ids = {getattr(it, "plot_id") for it in items if getattr(it, "plot_id")}
|
||||
if plot_id_ids:
|
||||
refs = await BreedingPlotCRUD(self.auth, self.db).get_list(search={"id": ("in", list(plot_id_ids))})
|
||||
ref_map = {r.id: getattr(r, "plot_code") for r in refs}
|
||||
for it in items:
|
||||
it.plot_name = ref_map.get(getattr(it, "plot_id"))
|
||||
bre_personnel_id_ids = {getattr(it, "bre_personnel_id") for it in items if getattr(it, "bre_personnel_id")}
|
||||
if bre_personnel_id_ids:
|
||||
refs = await BreedingPersonnelCRUD(self.auth, self.db).get_list(search={"id": ("in", list(bre_personnel_id_ids))})
|
||||
ref_map = {r.id: getattr(r, "name") for r in refs}
|
||||
for it in items:
|
||||
it.bre_personnel_name = ref_map.get(getattr(it, "bre_personnel_id"))
|
||||
planting_id_ids = {getattr(it, "planting_id") for it in items if getattr(it, "planting_id")}
|
||||
if planting_id_ids:
|
||||
refs = await BreedingPlantingCRUD(self.auth, self.db).get_list(search={"id": ("in", list(planting_id_ids))})
|
||||
ref_map = {r.id: (getattr(r, "planting_date") or f"定植#{r.id}") for r in refs}
|
||||
for it in items:
|
||||
it.planting_name = ref_map.get(getattr(it, "planting_id"))
|
||||
study_ids = {getattr(it, "trial_study_id") for it in items if getattr(it, "trial_study_id")}
|
||||
if study_ids:
|
||||
refs = await BreedingTrialStudyCRUD(self.auth, self.db).get_list(search={"id": ("in", list(study_ids))})
|
||||
ref_map = {r.id: getattr(r, "study_name") for r in refs}
|
||||
for it in items:
|
||||
it.study_name = ref_map.get(getattr(it, "trial_study_id"))
|
||||
rootstock_ids = {getattr(it, "rootstock_id") for it in items if getattr(it, "rootstock_id")}
|
||||
if rootstock_ids:
|
||||
refs = await BreedingRootstockCRUD(self.auth, self.db).get_list(search={"id": ("in", list(rootstock_ids))})
|
||||
ref_map = {r.id: getattr(r, "rootstock_name") for r in refs}
|
||||
for it in items:
|
||||
it.rootstock_name = ref_map.get(getattr(it, "rootstock_id"))
|
||||
clone_ids = {getattr(it, "clone_id") for it in items if getattr(it, "clone_id")}
|
||||
if clone_ids:
|
||||
refs = await BreedingCloneCRUD(self.auth, self.db).get_list(search={"id": ("in", list(clone_ids))})
|
||||
ref_map = {r.id: getattr(r, "clone_code") for r in refs}
|
||||
for it in items:
|
||||
it.clone_name = ref_map.get(getattr(it, "clone_id"))
|
||||
germ_ids = {getattr(it, "germplasm_id") for it in items if getattr(it, "germplasm_id")}
|
||||
if germ_ids:
|
||||
germs = await BreedingGermplasmCRUD(self.auth, self.db).get_list(search={"id": ("in", list(germ_ids))})
|
||||
germ_map = {r.id: getattr(r, "cultivar_name") for r in germs}
|
||||
for it in items:
|
||||
it.germplasm_name = germ_map.get(getattr(it, "germplasm_id"))
|
||||
entry_ids = {getattr(it, "entry_id") for it in items if getattr(it, "entry_id")}
|
||||
if entry_ids:
|
||||
entries = await BreedingTrialStudyEntryCRUD(self.auth, self.db).get_list(search={"id": ("in", list(entry_ids))})
|
||||
entry_map = {r.id: getattr(r, "entry_number") for r in entries}
|
||||
for it in items:
|
||||
it.entry_number = entry_map.get(getattr(it, "entry_id"))
|
||||
|
||||
async def detail(self, id: int) -> TreeOutSchema:
|
||||
obj = await BreedingTreeCRUD(self.auth, self.db).get(id=id)
|
||||
if not obj:
|
||||
raise CustomException(msg="该育种单株不存在")
|
||||
out = TreeOutSchema.model_validate(obj)
|
||||
await self._attach_fk_labels([out])
|
||||
return out
|
||||
|
||||
async def get_list(
|
||||
self,
|
||||
search: TreeQueryParam | None = None,
|
||||
order_by: list[dict[str, str]] | None = None,
|
||||
) -> list[TreeOutSchema]:
|
||||
obj_list = await BreedingTreeCRUD(self.auth, self.db).get_list(
|
||||
search=search_to_dict(search), order_by=order_by
|
||||
)
|
||||
outs = [TreeOutSchema.model_validate(obj) for obj in obj_list]
|
||||
await self._attach_fk_labels(outs)
|
||||
return outs
|
||||
|
||||
async def page(
|
||||
self,
|
||||
page_no: int,
|
||||
page_size: int,
|
||||
search: TreeQueryParam | None = None,
|
||||
order_by: list[dict[str, str]] | None = None,
|
||||
) -> PageResultSchema[TreeOutSchema]:
|
||||
offset = (page_no - 1) * page_size
|
||||
result = await BreedingTreeCRUD(self.auth, self.db).page(
|
||||
offset=offset,
|
||||
limit=page_size,
|
||||
order_by=order_by or [{"id": "asc"}],
|
||||
search=search_to_dict(search, {}),
|
||||
out_schema=TreeOutSchema,
|
||||
)
|
||||
await self._attach_fk_labels(result.items)
|
||||
return result
|
||||
|
||||
async def _gen_tree_no(self, combination_id: int) -> str:
|
||||
"""自动生成单株编号：{组合编号}-{两位序号}（如 26001-01），原子取号。"""
|
||||
cc = await BreedingCrossCombinationCRUD(self.auth, self.db).get(id=combination_id)
|
||||
base = (cc.combination_code or f"C{combination_id}") if cc else f"C{combination_id}"
|
||||
|
||||
async def _seed() -> int | None:
|
||||
crud = BreedingTreeCRUD(self.auth, self.db)
|
||||
objs = await crud.get_list(search={"combination_id": ("eq", combination_id)})
|
||||
max_seq = 0
|
||||
for o in objs:
|
||||
tail = (o.tree_no or "").rsplit("-", 1)[-1]
|
||||
if tail.isdigit():
|
||||
max_seq = max(max_seq, int(tail))
|
||||
return max_seq + 1
|
||||
|
||||
seq = await NumberGenService(self.db).next_seq(f"tree:{combination_id}", seed_fn=_seed)
|
||||
return f"{base}-{seq:02d}"
|
||||
|
||||
async def _derive_from_planting(self, planting_id: int | None, fields: dict[str, Any]) -> None:
|
||||
"""单写点派生：试验/区组/参试条目以定植记录为准，覆盖写入单株。"""
|
||||
if not planting_id:
|
||||
return
|
||||
planting = await BreedingPlantingCRUD(self.auth, self.db).get(id=planting_id)
|
||||
if not planting:
|
||||
return
|
||||
for col in ("trial_study_id", "block_no", "entry_id"):
|
||||
val = getattr(planting, col, None)
|
||||
if val is not None:
|
||||
fields[col] = val
|
||||
|
||||
async def create(self, data: TreeCreateSchema) -> TreeOutSchema:
|
||||
fields = data.model_dump(exclude_none=True)
|
||||
if _is_blank(fields.get("tree_no")):
|
||||
fields["tree_no"] = await self._gen_tree_no(fields["combination_id"])
|
||||
# 育种阶段自动设置：F 代/回交杂种实生苗 → seedling(童期)，亲本/成株由调用方显式给
|
||||
if _is_blank(fields.get("stage")):
|
||||
gen = str(fields.get("generation") or "").strip().upper()
|
||||
if gen in ("F1", "F2", "BC1", "BC2", "BC3"):
|
||||
fields["stage"] = "seedling"
|
||||
fields["dam_id"], fields["sire_id"], parent_warning = await self._resolve_parents(
|
||||
fields.get("combination_id"), fields.get("dam_id"), fields.get("sire_id")
|
||||
)
|
||||
await self._derive_from_planting(fields.get("planting_id"), fields)
|
||||
data = TreeCreateSchema(**fields)
|
||||
exist_obj = await BreedingTreeCRUD(self.auth, self.db).get(tree_no=data.tree_no)
|
||||
if exist_obj:
|
||||
raise CustomException(msg="创建失败，单株编号已存在")
|
||||
await assert_parents_exist(
|
||||
self.db,
|
||||
[
|
||||
(CrossCombinationModel, data.combination_id, '杂交组合'),
|
||||
(TrialStudyModel, data.trial_study_id, '试验执行'),
|
||||
(CloneModel, data.clone_id, '无性系'),
|
||||
(RootstockModel, data.rootstock_id, '砧木'),
|
||||
(BreedingPlotModel, data.plot_id, '试验地块'),
|
||||
(PlantingModel, data.planting_id, '定植'),
|
||||
(PersonnelModel, data.bre_personnel_id, '育种人员'),
|
||||
],
|
||||
)
|
||||
await assert_dict_values(
|
||||
self.db,
|
||||
[
|
||||
('row_orientation', data.row_orientation, '行向'),
|
||||
('tree_status', data.status, '单株状态'),
|
||||
('breeding_stage', data.stage, '育种阶段'),
|
||||
('breeding_generation', data.generation, '世代'),
|
||||
],
|
||||
)
|
||||
|
||||
obj = await BreedingTreeCRUD(self.auth, self.db).create(data=data)
|
||||
out = TreeOutSchema.model_validate(obj)
|
||||
if parent_warning:
|
||||
out.warning = parent_warning
|
||||
await self._attach_fk_labels([out])
|
||||
return out
|
||||
|
||||
async def update(self, id: int, data: TreeUpdateSchema) -> TreeOutSchema:
|
||||
obj = await BreedingTreeCRUD(self.auth, self.db).get(id=id)
|
||||
if not obj:
|
||||
raise CustomException(msg="更新失败，该育种单株不存在")
|
||||
if data.tree_no is not None:
|
||||
exist_obj = await BreedingTreeCRUD(self.auth, self.db).get(tree_no=data.tree_no)
|
||||
if exist_obj and exist_obj.id != id:
|
||||
raise CustomException(msg="更新失败，单株编号重复")
|
||||
await assert_parents_exist(
|
||||
self.db,
|
||||
[
|
||||
(CrossCombinationModel, data.combination_id, '杂交组合'),
|
||||
(TrialStudyModel, data.trial_study_id, '试验执行'),
|
||||
(CloneModel, data.clone_id, '无性系'),
|
||||
(RootstockModel, data.rootstock_id, '砧木'),
|
||||
(BreedingPlotModel, data.plot_id, '试验地块'),
|
||||
(PlantingModel, data.planting_id, '定植'),
|
||||
(PersonnelModel, data.bre_personnel_id, '育种人员'),
|
||||
],
|
||||
)
|
||||
await assert_dict_values(
|
||||
self.db,
|
||||
[
|
||||
('row_orientation', data.row_orientation, '行向'),
|
||||
('tree_status', data.status, '单株状态'),
|
||||
('breeding_stage', data.stage, '育种阶段'),
|
||||
('breeding_generation', data.generation, '世代'),
|
||||
],
|
||||
)
|
||||
await assert_status_forward(self.db, "tree_status", [obj.status], data.status, "单株状态")
|
||||
|
||||
# 母本/父本：显式给出则校验；否则随当前(新)组合自动派生
|
||||
eff_combo = data.combination_id if data.combination_id is not None else obj.combination_id
|
||||
dam, sire, parent_warning = await self._resolve_parents(eff_combo, data.dam_id, data.sire_id)
|
||||
data = data.model_copy(update={"dam_id": dam, "sire_id": sire})
|
||||
|
||||
# 单写点派生：定植记录持有试验/区组/参试条目
|
||||
eff_planting = data.planting_id if data.planting_id is not None else obj.planting_id
|
||||
if data.planting_id is not None or obj.planting_id is not None:
|
||||
fields = dict(data.model_dump(exclude_none=True))
|
||||
await self._derive_from_planting(eff_planting, fields)
|
||||
if any(fields.get(c) != getattr(obj, c) for c in ("trial_study_id", "block_no", "entry_id")):
|
||||
data = TreeUpdateSchema(**fields)
|
||||
|
||||
obj = await BreedingTreeCRUD(self.auth, self.db).update(id=id, data=data)
|
||||
out = TreeOutSchema.model_validate(obj)
|
||||
if parent_warning:
|
||||
out.warning = parent_warning
|
||||
await self._attach_fk_labels([out])
|
||||
return out
|
||||
|
||||
async def delete(self, ids: list[int]) -> None:
|
||||
if not ids:
|
||||
raise CustomException(msg="删除失败，删除对象不能为空")
|
||||
objs = await BreedingTreeCRUD(self.auth, self.db).get_list(search={"id": ("in", ids)})
|
||||
obj_map = {o.id: o for o in objs}
|
||||
for id_ in ids:
|
||||
if id_ not in obj_map:
|
||||
raise CustomException(msg="删除失败，该育种单株不存在")
|
||||
await assert_no_children(
|
||||
self.db,
|
||||
ids,
|
||||
[
|
||||
(TreeEvaluationModel, 'tree_id', '单株评价'),
|
||||
(TreePhotoModel, 'tree_id', '单株照片'),
|
||||
(SelectionResultModel, 'tree_id', '选择结果'),
|
||||
(TraitObservationModel, 'tree_id', '性状观测'),
|
||||
],
|
||||
)
|
||||
await BreedingTreeCRUD(self.auth, self.db).delete(ids=ids)
|
||||
|
||||
async def list_options(self) -> list[dict[str, Any]]:
|
||||
"""供前端下拉选择使用：返回 [{value, label}]。"""
|
||||
obj_list = await BreedingTreeCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
return [{"value": o.id, "label": o.tree_no} for o in obj_list]
|
||||
|
||||
@staticmethod
|
||||
def batch_export(obj_list: list[dict[str, Any]]) -> bytes:
|
||||
mapping_dict = {
|
||||
"combination_name": "杂交组合",
|
||||
"plot_name": "试验地块/位置",
|
||||
"planting_name": "来源定植批次",
|
||||
"tree_no": "单株编号",
|
||||
"row_orientation": "行向",
|
||||
"row_no": "行数",
|
||||
"col_no": "列数",
|
||||
"planted_date": "定植时间",
|
||||
"bre_personnel_name": "责任人",
|
||||
"status": "状态",
|
||||
"stage": "育种阶段",
|
||||
"generation": "世代",
|
||||
"germplasm_name": "关联种质",
|
||||
"entry_number": "参试编号",
|
||||
"remark": "备注",
|
||||
"created_time": "创建时间",
|
||||
"created_by": "创建者",
|
||||
}
|
||||
data = [dict(item) for item in obj_list]
|
||||
for item in data:
|
||||
creator = item.get("created_by")
|
||||
item["created_by"] = creator.get("name", "未知") if isinstance(creator, dict) else "未知"
|
||||
item["row_orientation"] = dict_value_to_label("row_orientation", item.get("row_orientation"))
|
||||
item["status"] = dict_value_to_label("tree_status", item.get("status"))
|
||||
item["stage"] = dict_value_to_label("breeding_stage", item.get("stage"))
|
||||
item["generation"] = dict_value_to_label("breeding_generation", item.get("generation"))
|
||||
return ExcelUtil.export_list2excel(list_data=data, mapping_dict=mapping_dict)
|
||||
|
||||
async def batch_import(self, file: UploadFile, update_support: bool = False) -> ImportResultSchema:
|
||||
header_dict = {
|
||||
"杂交组合": "combination_id",
|
||||
"试验地块/位置": "plot_id",
|
||||
"来源定植批次": "planting_id",
|
||||
"单株编号": "tree_no",
|
||||
"行向": "row_orientation",
|
||||
"行数": "row_no",
|
||||
"列数": "col_no",
|
||||
"定植时间": "planted_date",
|
||||
"责任人": "bre_personnel_id",
|
||||
"状态": "status",
|
||||
"育种阶段": "stage",
|
||||
"世代": "generation",
|
||||
"备注": "remark",
|
||||
}
|
||||
try:
|
||||
contents = await file.read()
|
||||
rows = ExcelUtil.read_excel_to_dicts(contents)
|
||||
await file.close()
|
||||
if not rows:
|
||||
raise CustomException(msg="导入文件为空")
|
||||
missing_headers = [h for h in header_dict if h not in rows[0]]
|
||||
if missing_headers:
|
||||
raise CustomException(msg=f"导入文件缺少必要的列: {', '.join(missing_headers)}")
|
||||
combination_id_refs = await BreedingCrossCombinationCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
combination_id_map = {getattr(r, "combination_code"): r.id for r in combination_id_refs}
|
||||
combination_parents_map = {
|
||||
r.id: (getattr(r, "female_parent_id"), getattr(r, "male_parent_id")) for r in combination_id_refs
|
||||
}
|
||||
plot_id_refs = await BreedingPlotCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
plot_id_map = {getattr(r, "plot_code"): r.id for r in plot_id_refs}
|
||||
bre_personnel_id_refs = await BreedingPersonnelCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
bre_personnel_id_map = {getattr(r, "name"): r.id for r in bre_personnel_id_refs}
|
||||
planting_id_refs = await BreedingPlantingCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
planting_id_map = {str(getattr(r, "planting_date") or r.id): r.id for r in planting_id_refs}
|
||||
mapped_rows = []
|
||||
for row in rows:
|
||||
mapped_rows.append({en: row.get(ch) for ch, en in header_dict.items()})
|
||||
required_fields = ["combination_id", "tree_no"]
|
||||
errors = []
|
||||
for field in required_fields:
|
||||
missing_indices = [i + 1 for i, r in enumerate(mapped_rows) if _is_blank(r.get(field))]
|
||||
if missing_indices:
|
||||
field_name = next(k for k, v in header_dict.items() if v == field)
|
||||
rows_str = "、".join(str(i) for i in missing_indices)
|
||||
errors.append(f"{field_name}不能为空，第{rows_str}行")
|
||||
if errors:
|
||||
raise CustomException(msg=f"导入失败，以下行缺少必要字段：\n{'; '.join(errors)}")
|
||||
error_msgs: list[str] = []
|
||||
success_count = 0
|
||||
crud = BreedingTreeCRUD(self.auth, self.db)
|
||||
resolver = DictLabelResolver(
|
||||
self.auth, self.db,
|
||||
["row_orientation", "tree_status", "breeding_stage", "breeding_generation"],
|
||||
)
|
||||
for i, row in enumerate(mapped_rows, start=1):
|
||||
try:
|
||||
combination_id_val = combination_id_map.get(str(row.get("combination_id")).strip()) if not _is_blank(row.get("combination_id")) else None
|
||||
plot_id_val = plot_id_map.get(str(row.get("plot_id")).strip()) if not _is_blank(row.get("plot_id")) else None
|
||||
planting_id_val = planting_id_map.get(str(row.get("planting_id")).strip()) if not _is_blank(row.get("planting_id")) else None
|
||||
bre_personnel_id_val = bre_personnel_id_map.get(str(row.get("bre_personnel_id")).strip()) if not _is_blank(row.get("bre_personnel_id")) else None
|
||||
combo_parents = combination_parents_map.get(combination_id_val, (None, None))
|
||||
fields = {
|
||||
"combination_id": combination_id_val,
|
||||
"dam_id": combo_parents[0],
|
||||
"sire_id": combo_parents[1],
|
||||
"plot_id": plot_id_val,
|
||||
"planting_id": planting_id_val,
|
||||
"tree_no": _none_if_blank(row.get("tree_no")),
|
||||
"row_orientation": await resolver.resolve("row_orientation", row.get("row_orientation")),
|
||||
"row_no": _to_int(row.get("row_no")),
|
||||
"col_no": _to_int(row.get("col_no")),
|
||||
"planted_date": _none_if_blank(row.get("planted_date")),
|
||||
"bre_personnel_id": bre_personnel_id_val,
|
||||
"status": await resolver.resolve("tree_status", row.get("status")),
|
||||
"stage": await resolver.resolve("breeding_stage", row.get("stage")),
|
||||
"generation": await resolver.resolve("breeding_generation", row.get("generation")),
|
||||
"remark": _none_if_blank(row.get("remark")),
|
||||
}
|
||||
unique_kwargs = {"tree_no": fields["tree_no"]}
|
||||
create_data = TreeCreateSchema(**fields)
|
||||
exist_obj = await crud.get(**unique_kwargs)
|
||||
if exist_obj:
|
||||
if update_support:
|
||||
await crud.update(id=exist_obj.id, data=TreeUpdateSchema(**fields))
|
||||
success_count += 1
|
||||
else:
|
||||
error_msgs.append(f"第{i}行: 单株编号 {fields['tree_no']} 已存在")
|
||||
else:
|
||||
await crud.create(data=create_data)
|
||||
success_count += 1
|
||||
except Exception as e:
|
||||
error_msgs.append(f"第{i}行: {e!s}")
|
||||
continue
|
||||
return ImportResultSchema(
|
||||
valid_count=success_count,
|
||||
invalid_count=len(error_msgs),
|
||||
message_list=error_msgs,
|
||||
)
|
||||
except Exception as e:
|
||||
logger.error(f"批量导入育种单株失败: {e!s}")
|
||||
raise CustomException(msg=f"导入失败: {e!s}")
|
||||
|
||||
@staticmethod
|
||||
def import_template_download() -> bytes:
|
||||
header_list = [
|
||||
"杂交组合",
|
||||
"试验地块/位置",
|
||||
"来源定植批次",
|
||||
"单株编号",
|
||||
"行向",
|
||||
"行数",
|
||||
"列数",
|
||||
"定植时间",
|
||||
"责任人",
|
||||
"状态",
|
||||
"育种阶段",
|
||||
"世代",
|
||||
"备注",
|
||||
]
|
||||
selector_header_list = ["行向", "状态", "育种阶段", "世代"]
|
||||
option_list = [
|
||||
{"行向": ["南北行", "东西行"]},
|
||||
{"状态": ["存活", "入选", "初选", "重点", "保存", "淘汰"]},
|
||||
{"育种阶段": ["种质", "亲本", "实生苗", "初选株", "复选株", "品系", "区试品系", "新品种"]},
|
||||
{"世代": ["F1", "F2", "BC1", "BC2", "BC3"]},
|
||||
]
|
||||
return ExcelUtil.get_excel_template(
|
||||
header_list=header_list,
|
||||
selector_header_list=selector_header_list,
|
||||
option_list=option_list,
|
||||
)
|
||||
Reference in New Issue
Block a user