feat: initial commit - oncology literature search platform
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OncoLit: a multi-tenant oncology literature search, feed, and
collaboration platform. Built with FastAPI + Vue 3 + PostgreSQL.
Includes PubMed pipeline, drug approvals, AI summaries, and
systematic review tools.
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# SciLit 生产部署指南
## 前置条件
- 服务器已安装 Docker 24+ + docker compose plugin
- SSH 可连接到服务器(推荐 `~/.ssh/config`
- 代码仓库可被服务器 `git pull`Gitee/GitHub/自建 Git
## 快速部署
```bash
# 1. 服务器上 clone 项目
ssh root@your-server.com
git clone https://gitee.com/your-org/scilit-oncology.git /root/scilit-oncology
cd /root/scilit-oncology
# 2. 配置环境变量
cp .env.example .env
# 编辑 .env,至少填写以下必填项:
# PG_PASSWORD, REDIS_PASSWORD, JWT_SECRET, PUBLIC_BASE_URL
# 3. 启动
docker compose -f docker-compose.prod.yml --env-file .env up -d
# 检查是否就绪
curl http://localhost:8000/health
curl http://localhost:80
```
## 使用 deploy.sh 自动化部署
```bash
# 1. 配置服务器连接信息
cp deploy.env.example deploy.env
# 编辑 deploy.env,填入 SCILIT_HOST / SCILIT_USER / SCILIT_PATH
# 2. 推送代码并部署
source deploy.env && ./deploy.sh
```
## PostgreSQL 备份与恢复
### 备份
```bash
# 全量备份(压缩)
docker exec -t scilit-oncology_postgres_1 pg_dump -U scilit scilit | gzip > scilit-backup-$(date +%F).sql.gz
# 仅数据(不含索引,恢复更快)
docker exec -t scilit-oncology_postgres_1 pg_dump -U scilit --data-only --exclude-table=alembic_version scilit | gzip > scilit-data-$(date +%F).sql.gz
```
### 恢复
```bash
# 先停止后端服务(避免写入冲突)
docker compose -f docker-compose.prod.yml stop backend worker
# 恢复全量备份
gunzip -c scilit-backup-2026-07-08.sql.gz | docker exec -i scilit-oncology_postgres_1 psql -U scilit scilit
# 重启
docker compose -f docker-compose.prod.yml start backend worker
```
### 定时自动备份(推荐)
在服务器上配置 cron
```cron
# 每天凌晨 3 点备份,保留 30 天
0 3 * * * cd /root/scilit-oncology && docker exec -t $(docker ps -q -f name=postgres) pg_dump -U scilit scilit | gzip > /backups/scilit-$(date +\%F).sql.gz && find /backups -name 'scilit-*.sql.gz' -mtime +30 -delete
```
## 健康检查与运维
```bash
# 查看所有服务状态
docker compose -f docker-compose.prod.yml ps
# 查看日志
docker compose -f docker-compose.prod.yml logs -f backend
docker compose -f docker-compose.prod.yml logs -f worker
# 单独重启某个服务
docker compose -f docker-compose.prod.yml restart backend
# 更新到最新代码
git pull origin main
docker compose -f docker-compose.prod.yml build
docker compose -f docker-compose.prod.yml up -d --no-deps --remove-orphans
```
## HTTPS 配置
docker-compose.prod.yml 中的 Nginx 仅提供 HTTP 服务。建议使用上游反向代理:
### Caddy(推荐,自动 Let's Encrypt
```caddy
your-domain.com {
reverse_proxy 127.0.0.1:80
}
```
### Nginx
```nginx
server {
listen 443 ssl;
server_name your-domain.com;
ssl_certificate /etc/letsencrypt/live/your-domain.com/fullchain.pem;
ssl_certificate_key /etc/letsencrypt/live/your-domain.com/privkey.pem;
location / {
proxy_pass http://127.0.0.1:80;
proxy_set_header Host $host;
proxy_set_header X-Real-IP $remote_addr;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header X-Forwarded-Proto $scheme;
}
}
```
验证证书可用后更新 `PUBLIC_BASE_URL=https://your-domain.com` 并重启 backend。