feat: initial commit - oncology literature search platform
OncoLit: a multi-tenant oncology literature search, feed, and collaboration platform. Built with FastAPI + Vue 3 + PostgreSQL. Includes PubMed pipeline, drug approvals, AI summaries, and systematic review tools.
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"""Fix pub_date from article_date where article_date has real month/day"""
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import asyncio
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from sqlalchemy import text
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from sqlalchemy.ext.asyncio import create_async_engine
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DATABASE_URL = 'postgresql+asyncpg://scilit:scilit_prod_2026@postgres:5432/scilit'
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async def main():
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engine = create_async_engine(DATABASE_URL)
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async with engine.connect() as conn:
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# Preview
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r = await conn.execute(text("""
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SELECT id, pmid, pub_date, article_date FROM global_literature
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WHERE EXTRACT(MONTH FROM pub_date)=1 AND EXTRACT(DAY FROM pub_date)=1
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AND article_date IS NOT NULL
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AND NOT (EXTRACT(MONTH FROM article_date)=1 AND EXTRACT(DAY FROM article_date)=1)
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"""))
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rows = r.all()
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print(f'Found {len(rows)} records to fix via article_date:')
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for row in rows[:10]:
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print(f' pmid={row.pmid} {row.pub_date} -> {row.article_date}')
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# Fix
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fixed = 0
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for row in rows:
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await conn.execute(
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text("UPDATE global_literature SET pub_date = :ad, updated_at = NOW() WHERE id = :id"),
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{"ad": row.article_date, "id": row.id},
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)
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fixed += 1
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await conn.commit()
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print(f'\nFixed {fixed} records')
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await engine.dispose()
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asyncio.run(main())
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