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34047007@qq.com a37cc506fc fix: 第三轮PubMed搜索审计 — 14项修复（P0×5, P1×4, P3×5）
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P0 (搜索结果错误):
- 门控补全 sb/stat/uid_terms + dep_from/dep_to
- [SB] 映射修复: medline→citation_status, pubmed→no-op
- 括号组内单否定词丢失 not_() 修复
- HomeView URL watch 补全 sort/field/retracted/negative
- HomeView→SearchView 日期精度保留（urlDateFrom/urlDateTo）

P1 (功能缺陷):
- [ALL] 字段标签注册（_FIELD_TAG_MAP + _ALL_FIELD_TAGS）
- 独立日期字段 "2024-01-01"[DP] 降级修复（_dispatch_term）
- 浮点日期范围交换（2026-01-01:2024-01-01 → 自动排序）
- page_size URL 恢复 + syncSearchToUrl 输出

P3 (健壮性):
- MeSH 展开 try/catch（expand_atm + _expand_mesh_tag_ids）
- sort/field/boolean 参数验证（field_validator）
- GET /search 查询长度限制（100词）
- query_expansion.py 中文正则同步 [一-鿿㐀-䶿豈-﫿]
- import_mesh_full entry_terms 统一小写（匹配 JSONB @> 精确比较）

测试: 127/127 搜索测试通过，前端构建无报错
 2026-07-27 11:02:22 +08:00
34047007@qq.com e688241355 fix: 第二轮PubMed搜索合规审计 — 8项修复 + 6项新测试
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F1: search_engine.py `_pubmed_conditions` 顶层 [MH:noexp] 丢失 _noexp 标志
    按 _noexp 分组 mesh_terms，分别调用 _expand_mesh_tag_ids(noexp=True/False)

F2: search_engine.py 组内 NOT 违反 De Morgan 律
    全组 is_not=True 时单 NOT 包裹组合条件而非 per-term not_()

F3: pubmed_query_parser.py `_parse_not_expr` 不支持重复 NOT
    改为递归调用，NOT NOT toggle is_not（三重 NOT 正确）

F4: SearchView.vue Custom Range datePreset 不发送日期参数
    增加 datePreset === 'custom' 分支发送 year_from/year_to

F5: HomeView.vue restoreFromUrl 恢复不全
    补全 sort/field/retracted/negative_result

F6: AdvancedSearchPanel.vue precision_mode 死控件移除（UI+emit+reset）
    types/index.ts precision_mode 死类型字段移除

F7: types/index.ts is_oa 标记为 unused, reserved

F8: search_engine.py `_expand_mesh_tag_ids` N+1 → 2 批量查询
    所有 entry_terms 和 name_en 分别合并为 OR 查询

测试: 新增 NOT NOT/triple NOT/NOT group/DM:noexp 顶层 共 7 项
 2026-07-27 10:30:40 +08:00
34047007@qq.com 723c4fc5c9 fix: PubMed搜索合规 — 34项修复 + query_expansion UnboundLocalError + HomeView precision_mode残留
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Batch1 — 解析器 (pubmed_query_parser.py)
- P0-1: 未知字段标签降级为 WORD token 而非 ParseError
- P2-1: 增加未消费 token 检查
- P2-2: PRISMA 字段标签正则 [\w:+] → [\w:]+
- P2-3: Unicode NFKC 规格化输入
- P2-4: re.ASCII 防止 Unicode 数字匹配
- P2-9: 移除重复 dataclass 字段

Batch2 — 搜索引擎 (search_engine.py)
- P1-1: 批量 PMID 查询替代 N+1 循环
- P1-2: isdigit() → isdecimal()
- P1-5: 移除 precision_mode 参数
- P2-5: 移除死代码
- P2-6: 统一 _CHINESE_RE 正则

Batch3 — ATM 引擎 (query_expansion.py)
- P0-4: name_zh ILIKE 中文回退 + _find_mesh_tags 中文降级
- P1-3: name_en ILIKE 加 LIMIT 100

Batch4 — API 层 (features.py)
- P1-5: 移除 precision_mode 请求字段
- P1-11: 增加 logging
- P2-8: NLM_SUBSET_LABELS f-string 安全注释
- P2-12: split 校验器近似性注释

Batch5 — SearchView.vue
- P0-5a/b/c: 日期修复（UTC 方法、互斥逻辑、restoreFromQuery 合并）
- P2-10: 筛选模态关闭时重搜
- P3-1: 搜索框 aria-label

Batch6 — HomeView.vue
- P1-10: URL date → date_from/date_to
- P2-11: clearSearch 清空 feedItems 并重加载

Batch7 — LiteratureCard.vue
- P1-6: 字段标签正则 [\w-]+ → [\w:-]+
- P1-7: terms 切片限制 20 项防 ReDoS

后修复:
- query_expansion.py _find_partial_mesh_tags UnboundLocalError（单非中文词未初始化 tag_ids）
- HomeView.vue handleAdvancedSearch precision_mode 残留引用
 2026-07-27 09:45:17 +08:00
34047007@qq.com 43392438c8 新增全面验证测试 + 验证报告（102 测试全部通过）
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- test_comprehensive_verify.py (39 tests): 覆盖 Group A 解析器缺口
  （纯文本引号/通配符/数字、MH:noexp/MESH/SB/STAT/UID/JT/PA 字段标签、
  EDAT/DEP 日期范围、NOT 日期、双层括号、布尔优先级、混合查询、
  >100 token 降级、NOT 各字段）
- VERIFICATION_REPORT.md: 所有 P0-P4 17 项修复确认 ✅，5 项 ⚠️ 已知残留
 2026-07-27 09:12:46 +08:00
34047007@qq.com 5f69277eba feat: PubMed搜索合规审计 Phase 5-7 全部修复
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P1-2: [SB][STAT][UID][DEP][MESH]字段支持
P1-4: [MH:noexp]解析+抑制树展开
P3: 前端date_to/P3-1、CJK高亮/P3-3、extractPlainText/P3-4、precision_mode移除/P3-6、loadMore sort/P3-5
P4-1: 词数上限50→100
P4-2: retracted参数清理
 2026-07-27 09:03:19 +08:00
34047007@qq.com 62ca8fa6b8 chore: batch commit remaining changes
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Includes search engine improvements, Alembic migrations,
new services (pubmed_daily_update, query_expansion),
frontend updates, and documentation sync.
 2026-07-27 08:35:12 +08:00
34047007@qq.com 35b0a5c565 docs: add Gitea repo info to CLAUDE.md
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2026-07-27 08:26:10 +08:00
34047007@qq.com 036494ae35 chore: add Gitea service to docker-compose, fix gitignore
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- Gitea (postgres-backed) on ports 3000/2222
- Exclude .claude/ dir and *.db from git
- Update CLAUDE.md with Gitea remote info
 2026-07-27 08:13:53 +08:00
34047007@qq.com a6cd99a4ca feat: initial commit - oncology literature search platform
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OncoLit: a multi-tenant oncology literature search, feed, and
collaboration platform. Built with FastAPI + Vue 3 + PostgreSQL.
Includes PubMed pipeline, drug approvals, AI summaries, and
systematic review tools.
 2026-07-27 07:59:18 +08:00