34047007@qq.com
a6cd99a4ca
OncoLit: a multi-tenant oncology literature search, feed, and collaboration platform. Built with FastAPI + Vue 3 + PostgreSQL. Includes PubMed pipeline, drug approvals, AI summaries, and systematic review tools.
125 lines
3.7 KiB
Bash
125 lines
3.7 KiB
Bash
#!/bin/bash
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# SciLit Oncology — 一键部署脚本
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# Usage: bash setup.sh [dev|prod]
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set -e
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MODE=${1:-dev}
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PROJECT_DIR=$(cd "$(dirname "$0")/.." && pwd)
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echo "========================================="
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echo " SciLit Oncology — Setup ($MODE)"
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echo "========================================="
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# Check dependencies
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check_cmd() {
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if ! command -v "$1" &>/dev/null; then
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echo "ERROR: $1 is required but not installed."
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exit 1
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fi
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}
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check_cmd docker
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check_cmd python3
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if [ "$MODE" = "prod" ]; then
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echo ""
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echo ">>> Production deployment <<<"
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echo ""
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# Check env file
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if [ ! -f "$PROJECT_DIR/.env" ]; then
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echo "Creating .env from example..."
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cp "$PROJECT_DIR/backend/.env.example" "$PROJECT_DIR/.env"
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echo "⚠️ Please edit $PROJECT_DIR/.env with your production secrets!"
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echo " Required: DB_PASSWORD, JWT_SECRET, S3_ACCESS_KEY, S3_SECRET_KEY"
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echo " Optional: SMTP_HOST, SMTP_USER, SMTP_PASSWORD"
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exit 1
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fi
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echo "Starting production services..."
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docker compose -f "$PROJECT_DIR/docker-compose.prod.yml" up -d
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echo ""
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echo "Running database migrations..."
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docker compose -f "$PROJECT_DIR/docker-compose.prod.yml" exec backend alembic upgrade head
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echo ""
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echo "Loading seed data..."
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docker compose -f "$PROJECT_DIR/docker-compose.prod.yml" exec backend python scripts/seed_data.py
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echo ""
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echo "========================================="
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echo " Production deployment complete!"
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echo " Frontend: http://localhost"
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echo " API Docs: http://localhost:8000/docs"
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echo ""
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echo " Admin: admin@scilit.cn / admin123"
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echo " Demo: demo@test.cn / 123456"
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echo "========================================="
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elif [ "$MODE" = "dev" ]; then
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echo ""
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echo ">>> Development setup <<<"
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echo ""
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# Backend
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echo "Setting up backend..."
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cd "$PROJECT_DIR/backend"
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python3 -m venv venv 2>/dev/null || true
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source venv/bin/activate 2>/dev/null || source venv/Scripts/activate 2>/dev/null || true
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pip install -e ".[dev]" 2>/dev/null || pip install fastapi uvicorn sqlalchemy aiosqlite asyncpg pydantic pydantic-settings python-jose passlib bcrypt==4.0.1 python-multipart httpx lxml structlog pyyaml email-validator
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# Initialize DB + seed data
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echo "Initializing database..."
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python scripts/seed_data.py
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echo ""
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echo "Starting backend (dev mode)..."
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uvicorn app.main:app --host 0.0.0.0 --port 8000 --reload &
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BACKEND_PID=$!
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echo "Backend PID: $BACKEND_PID"
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# Frontend
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echo ""
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echo "Setting up frontend..."
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cd "$PROJECT_DIR/frontend"
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npm install
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echo ""
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echo "Starting frontend (dev mode)..."
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npm run dev &
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FRONTEND_PID=$!
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echo "Frontend PID: $FRONTEND_PID"
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echo ""
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echo "========================================="
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echo " Dev environment ready!"
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echo " Frontend: http://localhost:5173"
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echo " Backend: http://localhost:8000/docs"
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echo " Admin: admin@scilit.cn / admin123"
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echo " Demo: demo@test.cn / 123456"
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echo ""
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echo " Press Ctrl+C to stop both services"
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echo "========================================="
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trap "kill $BACKEND_PID $FRONTEND_PID 2>/dev/null" EXIT
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wait
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elif [ "$MODE" = "import-pubmed" ]; then
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echo ">>> PubMed Baseline Import <<<"
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BASELINE_DIR="$2"
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if [ -z "$BASELINE_DIR" ]; then
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echo "Usage: bash setup.sh import-pubmed /path/to/pubmed/baseline/"
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echo ""
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echo "Download baseline from: ftp.ncbi.nlm.nih.gov/pubmed/baseline/"
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exit 1
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fi
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cd "$PROJECT_DIR/backend"
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python scripts/pubmed_baseline.py --dir "$BASELINE_DIR" --demo
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else
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echo "Usage: bash setup.sh [dev|prod|import-pubmed <dir>]"
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exit 1
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fi
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